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Jones, J.B., and P.J. Mulholland, editors. 2000. Streams and Ground Waters. Academic Press, San Diego.

 

PUBLICATIONS (PEER-REVIEWED) AND BOOK CHAPTERS

Jaffé, R., Y. Yamashita, N. Maie, W.T. Cooper, T. Dittmar, W.K. Dodds, J.B. Jones, T. Myoshi, J.R. Ortiz-Zayas, D.C. Podgorski, and A. Watanabe. 2012. Dissolved organic matter in headwater streams: compositional variablility across climatic regions of North America. Geochimica et Cosmochimica Acta 94:95-108. DOI: 10.1016/j.gca.2012.06.031.

Harms, T.K., and J.B. Jones. 2012. Thaw depth determines reaction and transport of inorganic nitrogen in valley bottom permafrost soils. Global Change Biology. DOI: 10.1111/j.1365-2486.2012.02731.x.

Bowden, W.B., J.R. Larouche, A.R. Pearce, B.T. Crosby, K. Krieger, M.B. Flinn, J. Kampman, M.N. Gooseff, S.E. Godsey, J.B. Jones, B.W. Abbott, M.T. Jorgenson, G.W. Kling, M. Mack, E.A.G. Schuur, A.F Baron, and E.B. Rastetter. 2012. An Integrated Assessment of the Influences of Upland Thermal-Erosional Features on Landscape Structure and Function in the Foothills of the Brooks Range, Alaska. Pages 61 – 66 in K.M. Hinkel, editor. Proceedings of the Tenth International Conference on Permafrost. Salekhard, Siberia.

Flinn, M.B., W.B. Bowden, A.W. Balser, J.B. Jones, and M.N. Gooseff. 2012. Soil and water chemistry characteristics of thermo-erosional features in the western Noatak River Basin, Alaska, USA. Pages 101 – 106 in K.M. Hinkel, editor. Proceedings of the Tenth International Conference on Permafrost. Salekhard, Siberia.

Roach, J., B. Griffith, D. Verbyla and J. Jones. 2011. Mechanisms influencing changes in lake area in the Alaskan boreal forest. Global Change Biology. DOI: 10.1111/j.1365-2486.2011.02446.x.

Jones, J.B., and A.J. Rinehart. 2010. The long term response of stream flow to climatic warming in headwater streams of interior Alaska. Canadian Journal of Forest Research 40:1210-1218. DOI: 10.1139/X10-047.

Chapin, F.S., III, A.D. McGuire, R.W. Ruess, T. N. Hollingsworth, E. S. Euskirchen, J. F. Johnstone, J. B. Jones, M. T. Jorgenson, E. S. Kasischke, K. Kielland, G. P. Kofinas, A. H. Lloyd, M. C. Mack, D. L. Taylor, M. R. Turetsky, and J. Yarie. 2010. Resilience and change in Alaska’s Boreal forest. Canadian Journal of Forest Research 40:1360-1370. DOI: 10.1139/x10-074.

O’Donnell, J.A., G.R. Aiken, E.S. Kane, and J.B. Jones. 2010. Source water controls on DOC character and origin in streams of Yukon River basin, interior Alaska. Journal of Geophysical Research – Biogeosciences 115: G03025, DOI: 10.1029/2009JG001153.

Betts, E.F., and J.B. Jones. 2009. Impact of wildfire on stream nutrient chemistry and ecosystem metabolism in boreal forest catchments of interior Alaska. Arctic, Antarctic, and Alpine Research 41:407-417. DOI: 10.1657/1938-4246-41.4.407.

Balcarczyk, K.L., J.B. Jones, R. Jaffé, and N. Maie. 2009. Stream dissolved organic matter bioavailability and composition in watersheds underlain with discontinuous permafrost. Biogeochemistry 94:255-270. DOI: 10.1007/s10533-009-9324-x.

Fellman, J.B., E. Hood, R.T. Edwards, and J.B. Jones. 2009. Uptake of allochthonuous dissolved organic matter from soil and salmon in coastal temperate rainforest streams. Ecosystems. DOI: 10.1007/s10021-009-9254-4.

Gooseff, M.N., A. Balser, W.B. Bowden, and J.B. Jones. 2009. Effects of hillslope thermokarst in northern Alaska. EOS, Transactions of the American Geophysical Union 90(4):29-30. DOI: 10.1029/2009EO040001.

Clilverd, H.M., J.B. Jones, and K. Kielland. 2008. Nitrogen retention in the hyporheic zone of a glacial river in interior Alaska. Biogeochemistry. DOI: 10.1007/s10533-008-9192-9.

Kane, E.S., E.F. Betts, A.J. Burgin, H.M. Clilverd, C.L. Crenshaw, J.B. Fellman, I.H. Myers-Smith, J.A. O’Donnell, D.J. Sobota, W.J. Van Verseveld, and J.B. Jones. 2008. Precipitation control over nitrogen import-export budgets across watersheds: a synthesis of long-term ecological research. Ecohydrology. DOI: 10.1002/eco.10.

Lisuzzo, N.J., K. Kielland, and J.B. Jones. 2008. Hydrologic controls of nitrogen availability to a high-latitude, semi-arid floodplain. Ecoscience 15:366-376. DOI: 10.2980/15-3-2998.

White, D., V. Autier, K. Yoshikawa, J. Jones, and S. Seelen. 2008. Using DOC to better understand local hydrology in a subarctic watershed. Cold Regions Science and Technology 51:68-75. DOI: 10.1007/s10021-009-9254-4.

Petrone, K.C., L.D. Hinzman, H. Shibata, J.B. Jones, and R.D. Boone. 2007. The influence of fire and permafrost on sub-arctic stream chemistry during storms. Hydrologic Processes 21:423-434. DOI: 10.1002/Hyp.6247.

Jones, J.B., and D. Wagner. 2006. Microhabitat-specific controls on soil respiration and denitrification in the Mojave Desert: the role of harvester ant nests and vegetation. Western North American Naturalist 66:426-432.

Brenner, R.E., R.D. Boone, J.B. Jones, K. Lajtha, and R.W. Ruess. 2006. Successional and physical controls on the retention of nitrogen in an undisturbed boreal forest ecosystem. Oecologia DOI 10.1007/s00442-006-0399-y.

Chapin, F.S. III, A.D. McGuire, R.W. Ruess, M.W. Walker, R. Boone, M. Edwards, B. Finney, L.D. Hinzman, J.B. Jones, G.P. Juday, E.S. Kasischke, K. Kielland, A.H. Lloyd, M. Oswood, E. Rexstad, V. Romanovsky, J. Schimel, E. Sparrow, B. Sveinbjornsson, D.W. Valentine, K. Van Cleve, D.L. Verbyla, L.A. Viereck, R.A. Werner, T.L. Wurtz, and J. Yarie. 2006. Summary and Synthesis: Past and Future Changes. In F.S. Chapin et al. (editors). Alaska’s Changing Boreal Forest: a synthesis of the Bonanza Creek Long Term Ecological Research Program. Oxford University Press.

Hinzman, L.D., W.R. Bolton, K.C. Petrone, J.B. Jones, and P.C. Adams. 2006. Hydrologic processes in Alaska’s boreal forest. In F.S. Chapin et al. (editors). Alaska’s Changing Boreal Forest: a synthesis of the Bonanza Creek Long Term Ecological Research Program. Oxford University Press.

O’Donnell, J.A. and J.B. Jones. 2006. Nitrogen retention in the riparian zone of watersheds underlain by discontinuous permafrost. Freshwater Biology 51:854-864. DOI: 10.1111/j.1365-2427.2006.01535.x

Petrone, K.C., J.B. Jones, L.D. Hinzman, and R.D. Boone. 2006. Seasonal export of carbon, nitrogen and major solutes from Alaskan catchments with discontinuous permafrost. Journal of Geophysical Research – Biogeosciences:G02020, DOI: 10.1029/2005JG000055.

Wagner, D., and J.B. Jones. 2006. The impact of harvester ants on decomposition, N mineralization, litter quality, and the availability of N to plants in the Mojave Desert. Soil Biology and Biochemistry 38:2593-2601, DOI: 10.1016/j.soilbio.2006.02.024.

Jones, J.B., K.C. Petrone, J.C. Finlay, L.D. Hinzman, and W.R. Bolton. 2005. Nitrogen loss from watersheds of interior Alaska underlain with discontinuous permafrost. Geophysical Research Letters 32:L02401. DOI: 10.1029/2004GL021734.

Wagner, D., and J.B. Jones. 2004. Microsite variation in soil nutrient storage, microbial biomass, and soil erosion in the Mojave Desert: the contribution of harvester ants. Environmental Entomology 33:599-607. DOI: 10.1603/0046-225X-33.3.599.

Wagner, D., J.B. Jones, and D.W. Gordon. 2004. Development of harvester ant colonies alters soil chemistry. Soil Biology & Biochemistry 35:797-804. DOI: 10.1016/j.soilbio.2004.01.009.

Stanley, E.H., S.G. Fisher, and J.B. Jones. 2004. Effects of water loss on primary producers: a landscape-scale model. Aquatic Sciences 66:130-138. DOI: 10.1007/s00027-003-0646-9.

Jones, J.B., E.H. Stanley, and P.J. Mulholland. 2003. Long-term decline in carbon dioxide supersaturation in rivers across the contiguous United States. Geophysical Research Letters 30, DOI: 10.1029/2003GL017056.

Bertilsson, S., and J.B. Jones. 2003. Supply of dissolved organic matter to aquatic ecosystems: autochthonous sources.  Pages 3-24 in S. Findlay, and R.L. Sinsabaugh, editors. Aquatic Ecosystems: Interactivity of Dissolved Organic Matter. Academic Press. San Diego.

Jones, J.B. 2002. Groundwater controls on nutrient cycling in a Mojave Desert stream. Freshwater Biology 47:971-983. DOI: 10.1046/j.1365-2427.2002.00828.x.

Stanley, E.H., and J.B. Jones. 2000. Surface-subsurface interactions: past, present, and future. Pages 405-415 in J.B. Jones, and P.J. Mulholland, editors. Streams and Ground Waters. Academic Press. San Diego.

Jones, J.B., and P.J. Mulholland. 1998. Influence of drainage basin topography and elevation on carbon dioxide and methane supersaturation of stream water. Biogeochemistry 40:57-72. DOI: 10.1023/A:1005914121280.

Jones, J.B., and P.J. Mulholland. 1998. Carbon dioxide variation in a hardwood forest stream: an integrative measure of whole catchment soil respiration. Ecosystems 1:183-196. DOI: 10.1007/s100219900014.

Jones, J.B., and P.J. Mulholland. 1998. Methane input and evasion in a hardwood forest stream: effects of subsurface flow from shallow and deep pathways. Limnology and Oceanography 43:1243-1250. DOI: 10.4319/lo.1998.43.6.1243.

Fisher, S.G., N.B. Grimm, E. Marti, R.M. Holmes, and J.B. Jones. 1998. Material spiraling in stream corridors: a telescoping ecosystem model. Ecosystems 1:19-34. DOI: 10.1007/s100219900003.

Jones, J.B. 1997. Benthic organic matter storage in streams: a synthesis of data from the Stream Organic Matter Workshop. Pages 109-119 in J.R. Webster and J.L. Meyer (editors). Stream organic matter budgets. Journal of the North American Benthological Society 16:3-161.

Jones, J.B., J.D. Schade, S.G. Fisher, and N.B. Grimm. 1997. Organic matter dynamics in Sycamore Creek, a desert stream in Arizona, USA. Pages 78-82 in J.R. Webster and J.L. Meyer (editors). Stream organic matter budgets. Journal of the North American Benthological Society 16:3-161.

Jones, J.B., and R.M. Holmes. 1996. Surface-subsurface interactions in stream ecosystems. Trends in Ecology and Evolution 11:239-242.

Jones, J.B., S.G. Fisher, and N.B. Grimm. 1996. A long-term perspective of dissolved organic carbon transport in Sycamore Creek, Arizona. Hydrobiologia 317:183-188.

Holmes, R.M., J.B. Jones, S.G. Fisher, and N.B. Grimm. 1996. Denitrification in Sonoran Desert stream ecosystems. Biogeochemistry 33:125-146.

Jones, J.B., S.G. Fisher, and N.B. Grimm. 1995. Vertical hydrologic exchange and ecosystem metabolism in a Sonoran Desert stream. Ecology 76:942-952.

Jones, J.B., S.G. Fisher, and N.B. Grimm. 1995. Nitrification in the hyporheic zone of a desert stream ecosystem. Journal of the North American Benthological Society 14:249-258.

Jones, J.B. 1995. Factors controlling hyporheic respiration in a desert stream. Freshwater Biology 34:101-109

Jones, J.B., R.M. Holmes, S.G. Fisher, N.B. Grimm, and D.M. Greene. 1995. Methanogenesis in Arizona, USA dryland streams. Biogeochemistry 31:155-173.

Jones, J.B., R.M. Holmes, S.G. Fisher, and N.B. Grimm. 1994. Chemoautotrophic production and respiration in the hyporheic zone of a Sonoran Desert stream. Pages 329 - 338 in J.A. Stanford and H.M. Valett, editors. Proceeding of the Second International Conference on Ground Water Ecology. American Water Resources Association, Herndon, Virginia, USA.

Smock, L.A., L.C. Smith, J.B. Jones, and S.M. Hooper. 1994. Effects of drought and a hurricane on a coastal headwater stream. Archiv für Hydrobiologie 131:25-38.

Jones, J.B., and L.A. Smock. 1991. Transport and retention of particulate organic matter in two low-gradient headwater streams. Journal of the North American Benthological Society 10:115-126.

 

OTHER PUBLICATIONS

Jones, J.B., E.H. Stanley, and P.J. Mulholland. 2003. Increased alkalinity in the Mississippi. Science 302: 985-986.

Jones, J.B. 2000. Ecosystem. McGraw Hill Encyclopedia of Science and Technology, 9th Edition.

Jones, J.B. 1999. Review of Groundwater/surface water ecotones: biological and hydrological interactions and management options (J. Gibert, J. Mathieu, and F. Fourneir, editors). Journal of the North American Benthological Society 18:292-293.

Jones, J.B. 1997. Review of “Methods in Stream Ecology” (F.R. Hauer and G.A. Lamberti, editors). Trends in Ecology and Evolution 12:123-124.

Jones, J.B., and R.M. Holmes. 1996. Reply to “But the story gets better: subsurface invertebrates in stream ecosystems by A.J. Boulton and E.H. Stanley. Trends in Ecology and Evolution 11:430-431.

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